Lomberk Laboratory Epigenomics Discovery & Therapeutics

Our Publications

2026

Mutant KRAS Heterogeneity Shapes Nuclear Architecture During Pancreatic Cancer Initiation
Gareth Pollin, Angela J. Mathison, Elise N. Leverence, Thiago Milech De Assuncao, Juan Iovanna, Johnny C. Hong, Michael T. Zimmermann, Raul Urrutia, Gwen Lomberk
Epigenomes  ·  10 Mar 2026  ·  doi:10.3390/epigenomes10010019

2025

Transcriptional drivers and endocrine disorders
Gwen Lomberk, Rosalia C M Simmen
Endocrine Connections  ·  01 Oct 2025  ·  doi:10.1530/EC-25-0688
Genomic features of the methylosome protein MEP50 and its implications in hormone signaling and cancer
Gareth Pollin, Young-In Chi, Raul Urrutia, Gwen Lomberk
Endocrine Connections  ·  01 Sep 2025  ·  doi:10.1530/EC-25-0444
KRAS inhibition reverses chemotherapy resistance promoted by therapy-induced senescence-like in pancreatic ductal adenocarcinoma
Analia Meilerman Abuelafia, Patricia Santofimia-Castaño, Matias Estaras, Daniel Grasso, Eduardo Chuluyan, Gwen Lomberk, Raul Urrutia, Nelson Dusetti, Nicolas Fraunhoffer, Juan Iovanna
Translational Oncology  ·  01 Jul 2025  ·  doi:10.1016/j.tranon.2025.102421

2024

Emergent properties of the lysine methylome reveal regulatory roles via protein interactions and histone mimicry
Gareth Pollin, Young-In Chi, Angela J. Mathison, Michael T. Zimmermann, Gwen Lomberk, Raul Urrutia
Epigenomics  ·  05 Dec 2024  ·  doi:10.1080/17501911.2024.2435244
The triple code model for advancing research in rare and undiagnosed diseases beyond the base pairs
Gwen Lomberk, Raul Urrutia
Epigenomics  ·  04 Dec 2024  ·  doi:10.1080/17501911.2024.2436837
EHMT2 Inactivation in Pancreatic Epithelial Cells Shapes the Transcriptional Landscape and Inflammation Response of the Whole Pancreas
Gareth Pollin, Angela J. Mathison, Thiago M. de Assuncao, Anju Thomas, Lida Zeighami, …, Michael T. Zimmermann, Juan Iovanna, Victor X. Jin, Raul Urrutia, Gwen Lomberk
openRxiv  ·  16 Mar 2024  ·  doi:10.1101/2024.03.14.584700
Targeting NUPR1-dependent stress granules formation to induce synthetic lethality in KrasG12D-driven tumors
Patricia Santofimia-Castaño, Nicolas Fraunhoffer, Xi Liu, Ivan Fernandez Bessone, Marina Pasca di Magliano, …, Gwen Lomberk, Raul Urrutia, Philippe Soubeyran, Jose Luis Neira, Juan Iovanna
EMBO Molecular Medicine  ·  15 Feb 2024  ·  doi:10.1038/s44321-024-00032-2

2023

Deep computational phenotyping of genomic variants impacting the SET domain of KMT2C reveal molecular mechanisms for their dysfunction
Salomão Dória Jorge, Young-In Chi, Jose Lizarraga Mazaba, Neshatul Haque, Jessica Wagenknecht, …, Brian F. Volkman, Angela J. Mathison, Gwen Lomberk, Michael T. Zimmermann, Raul Urrutia
Frontiers in Genetics  ·  28 Nov 2023  ·  doi:10.3389/fgene.2023.1291307
Writers and readers of H3K9me2 form distinct protein networks during the cell cycle that include candidates for H3K9 mimicry
Gareth Pollin, Thiago M. De Assuncao, Salomao Doria Jorge, Young-In Chi, M. Cristine Charlesworth, Benjamin Madden, Juan Iovanna, Michael T. Zimmermann, Raul Urrutia, Gwen Lomberk
Bioscience Reports  ·  01 Oct 2023  ·  doi:10.1042/BSR20231093
EZH2 deletion does not impact acinar cell regeneration but restricts progression to pancreatic cancer in mice
Emilie Jaune-Pons, Xiaoyi Wang, Fatemeh Mousavi, Samad Elkaoutari, Kurt Berger, …, Angela J. Mathison, Nelson Dusetti, Raul Urrutia, Gwen Lomberk, Christopher L. Pin
openRxiv  ·  28 Sep 2023  ·  doi:10.1101/2023.09.25.559339
A Multi-Layered Computational Structural Genomics Approach Enhances Domain-Specific Interpretation of Kleefstra Syndrome Variants in EHMT1
Young-In Chi, Salomão D. Jorge, Davin R. Jensen, Brian C. Smith, Brian F. Volkman, Angela J. Mathison, Gwen Lomberk, Michael T. Zimmermann, Raul Urrutia
openRxiv  ·  07 Sep 2023  ·  doi:10.1101/2023.09.06.556558
Priming therapy by targeting enhancer-initiated pathways in patient-derived pancreatic cancer cells
Nicolas A. Fraunhoffer, Aura I. Moreno Vega, Analía Meilerman Abuelafia, Marie Morvan, Emilie Lebarbier, …, Raul Urrutia, Nelson Dusetti, Yuna Blum, Remy Nicolle, Juan Iovanna
eBioMedicine  ·  01 Jun 2023  ·  doi:10.1016/j.ebiom.2023.104602
Overlapping and Distinct Functions of an Extended Repertoire of KRAS Mutations
Michael Zimmermann, Angela Mathison, Xuan Li, Elise Leverence, Davin Jensen, …, Thiago Milech De Assuncao, Brian Smith, Brian Volkman, Gwen Lomberk, Raul Urrutia
Springer Science and Business Media LLC  ·  08 May 2023  ·  doi:10.21203/rs.3.rs-2883088/v1
KLF5 and p53 comprise an incoherent feed-forward loop directing cell-fate decisions following stress
Yizeng Yang, Dharmendra Bhargava, Xiao Chen, Taicheng Zhou, Gizem Dursuk, …, Zhen Zong, Sharyn I. Katz, Gwen A. Lomberk, Raul A. Urrutia, Jonathan P. Katz
Cell Death & Disease  ·  02 May 2023  ·  doi:10.1038/s41419-023-05731-1
Beyond Structural Bioinformatics for Genomics with Dynamics Characterization of an Expanded KRAS Mutational Landscape
Brian D. Ratnasinghe, Neshatul Haque, Jessica B. Wagenknecht, Davin R. Jensen, Guadalupe V. Esparza, …, Gwen Lomberk, Brian C. Smith, Brian F. Volkman, Raul Urrutia, Michael T. Zimmermann
openRxiv  ·  28 Apr 2023  ·  doi:10.1101/2023.04.28.536249
G9a Modulates Lipid Metabolism in CD4 T Cells to Regulate Intestinal Inflammation
Guilherme Piovezani Ramos, Adebowale O. Bamidele, Emily E. Klatt, Mary R. Sagstetter, Ahmed T. Kurdi, …, Hunter R. Gibbons, Thomas C. Smyrk, Steven Johnsen, Gwen Lomberk, William A. Faubion
Gastroenterology  ·  01 Feb 2023  ·  doi:10.1053/j.gastro.2022.10.011
Effects of Subnormothermic Regulated Hepatic Reperfusion on Mitochondrial and Transcriptomic Profiles in a Porcine Model
Joohyun Kim, Michael A. Zimmerman, Woo Young Shin, Brent T. Boettcher, Ju-Seog Lee, …, Gwen Lomberk, Amadou K. S. Camara, Raul A. Urrutia, David F. Stowe, Johnny C. Hong
Annals of Surgery  ·  10 Jan 2023  ·  doi:10.1097/SLA.0000000000005156
Beyond structural bioinformatics for genomics with dynamics characterization of an expanded KRAS mutational landscape
Brian D. Ratnasinghe, Neshatul Haque, Jessica B. Wagenknecht, Davin R. Jensen, Guadalupe K. Valdivia Esparza, …, Gwen Lomberk, Brian C. Smith, Brian F. Volkman, Raul Urrutia, Michael T. Zimmermann
Computational and Structural Biotechnology Journal  ·  01 Jan 2023  ·  doi:10.1016/j.csbj.2023.10.003
A multi-layered computational structural genomics approach enhances domain-specific interpretation of Kleefstra syndrome variants in EHMT1
Young-In Chi, Salomão D. Jorge, Davin R. Jensen, Brian C. Smith, Brian F. Volkman, Angela J. Mathison, Gwen Lomberk, Michael T. Zimmermann, Raul Urrutia
Computational and Structural Biotechnology Journal  ·  01 Jan 2023  ·  doi:10.1016/j.csbj.2023.10.022

2022

KLF5 and p53 comprise an incoherent feed-forward loop directing cell-fate decisions following stress
Yizeng Yang, Dharmendra Bhargava, Xiao Chen, Taicheng Zhou, Gizem Dursuk, …, Zhen Zong, Sharyn Katz, Gwen Lomberk, Raul Urrutia, Jonathan Katz
Springer Science and Business Media LLC  ·  16 Sep 2022  ·  doi:10.21203/rs.3.rs-2003235/v1
Multi-omics data integration and modeling unravels new mechanisms for pancreatic cancer and improves prognostic prediction
Nicolas A. Fraunhoffer, Analía Meilerman Abuelafia, Martin Bigonnet, Odile Gayet, Julie Roques, Remy Nicolle, Gwen Lomberk, Raul Urrutia, Nelson Dusetti, Juan Iovanna
npj Precision Oncology  ·  17 Aug 2022  ·  doi:10.1038/s41698-022-00299-z
NUPR1 protects against hyperPARylation-dependent cell death
Patricia Santofimia-Castaño, Can Huang, Xi Liu, Yi Xia, Stephane Audebert, …, Gwen Lomberk, Raul Urrutia, Philippe Soubeyran, Jose Luis Neira, Juan Iovanna
Communications Biology  ·  22 Jul 2022  ·  doi:10.1038/s42003-022-03705-1
Adapting Mentoring in Times of Crisis: What We Learned from COVID-19
Julie Tetzlaff, Gwen Lomberk, Heather M. Smith, Himanshu Agrawal, Dawn H. Siegel, Jennifer N. Apps
Academic Psychiatry  ·  25 Feb 2022  ·  doi:10.1007/s40596-022-01589-1
Structural bioinformatics enhances the interpretation of somatic mutations in KDM6A found in human cancers
Young-In Chi, Timothy J. Stodola, Thiago M. De Assuncao, Elise N. Leverence, Brian C. Smith, Brian F. Volkman, Angela J. Mathison, Gwen Lomberk, Michael T. Zimmermann, Raul Urrutia
Computational and Structural Biotechnology Journal  ·  01 Jan 2022  ·  doi:10.1016/j.csbj.2022.04.028

2021

Collateral Victim or Rescue Worker?—The Role of Histone Methyltransferases in DNA Damage Repair and Their Targeting for Therapeutic Opportunities in Cancer
Lishu He, Gwen Lomberk
Frontiers in Cell and Developmental Biology  ·  16 Nov 2021  ·  doi:10.3389/fcell.2021.735107
Precision medicine in trauma: a transformational frontier in patient care, education, and research
Christopher Stephen Davis, Katheryn Hope Wilkinson, Emily Lin, Nathaniel James Carpenter, Christina Georgeades, Gwen Lomberk, Raul Urrutia
European Journal of Trauma and Emergency Surgery  ·  16 Nov 2021  ·  doi:10.1007/s00068-021-01817-7
KrasG12D induces changes in chromatin territories that differentially impact early nuclear reprogramming in pancreatic cells
Angela J. Mathison, Romica Kerketta, Thiago Milech de Assuncao, Elise Leverence, Atefeh Zeighami, …, Marina Pasca di Magliano, Juan L. Iovanna, Michael T. Zimmermann, Gwen Lomberk, Raul Urrutia
Genome Biology  ·  14 Oct 2021  ·  doi:10.1186/s13059-021-02498-6
Computational modeling reveals key molecular properties and dynamic behavior of disruptor of telomeric silencing 1‐like ( DOT1L ) and partnering complexes involved in leukemogenesis
Timothy J. Stodola, Young‐In Chi, Thiago M. De Assuncao, Elise N. Leverence, Swarnendu Tripathi, …, Brian F. Volkman, Brian C. Smith, Gwen Lomberk, Michael T. Zimmermann, Raul Urrutia
Proteins: Structure, Function, and Bioinformatics  ·  12 Sep 2021  ·  doi:10.1002/prot.26219
New Insights Into Pancreatic Cancer: Notes from a Virtual Meeting
Elisabeth Hessmann, Günter Schneider, Corinne Bousquet, Channing Der, Stephan Dreyer, …, Roland Schmid, Susanne Sebens, Shiv K. Singh, Jens Siveke, Andreas Trumpp
Gastroenterology  ·  01 Sep 2021  ·  doi:10.1053/j.gastro.2021.04.082
Inactivation of the Euchromatic Histone-Lysine N-Methyltransferase 2 Pathway in Pancreatic Epithelial Cells Antagonizes Cancer Initiation and Pancreatitis-Associated Promotion by Altering Growth and Immune Gene Expression Networks
Guillermo Urrutia, Thiago Milech de Assuncao, Angela J. Mathison, Ann Salmonson, Romica Kerketta, …, Michael B. Dwinell, Michael T. Zimmermann, Juan L. Iovanna, Raul Urrutia, Gwen Lomberk
Frontiers in Cell and Developmental Biology  ·  23 Jun 2021  ·  doi:10.3389/fcell.2021.681153
Correction to: Molecular mechanics and dynamic simulations of well-known Kabuki syndrome-associated KDM6A variants reveal putative mechanisms of dysfunction
Young-In Chi, Timothy J. Stodola, Thiago M. De Assuncao, Elise N. Leverence, Swarnendu Tripathi, …, Brian F. Volkman, Brian C. Smith, Gwen Lomberk, Michael T. Zimmermann, Raul Urrutia
Orphanet Journal of Rare Diseases  ·  01 Jun 2021  ·  doi:10.1186/s13023-021-01892-4
Homotypic cell cannibalism, a cell‐death process regulated by the nuclear protein 1, opposes to metastasis in pancreatic cancer
Carla E Cano, María José Sandí, Tewfik Hamidi, Ezequiel L Calvo, Olivier Turrini, …, Stéphane Garcia, Gwen Lomberk, Guido Kroemer, Raul Urrutia, Juan L Iovanna
EMBO Molecular Medicine  ·  07 May 2021  ·  doi:10.15252/emmm.202114243
A GATA6-centred gene regulatory network involving HNFs and ΔNp63 controls plasticity and immune escape in pancreatic cancer
Bernhard Kloesch, Vivien Ionasz, Sumit Paliwal, Natascha Hruschka, Jaime Martinez de Villarreal, …, Dieter Saur, Roland Rad, Raul A Urrutia, Francisco X Real, Paola Martinelli
Gut  ·  12 Apr 2021  ·  doi:10.1136/gutjnl-2020-321397
Metabolomic profiling of pancreatic adenocarcinoma reveals key features driving clinical outcome and drug resistance
Abdessamad El Kaoutari, Nicolas A. Fraunhoffer, Owen Hoare, Carlos Teyssedou, Philippe Soubeyran, …, Julie Roques, Gwen Lomberk, Raul Urrutia, Nelson Dusetti, Juan Iovanna
eBioMedicine  ·  01 Apr 2021  ·  doi:10.1016/j.ebiom.2021.103332
Interpreting Sequence Variation in PDAC-Predisposing Genes Using a Multi-Tier Annotation Approach Performed at the Gene, Patient, and Cohort Level
Michael T. Zimmermann, Angela J. Mathison, Tim Stodola, Douglas B. Evans, Jenica L. Abrudan, …, Mohammed Aldakkak, Jennifer Geurts, Gwen Lomberk, Susan Tsai, Raul Urrutia
Frontiers in Oncology  ·  05 Mar 2021  ·  doi:10.3389/fonc.2021.606820
Molecular mechanics and dynamic simulations of well-known Kabuki syndrome-associated KDM6A variants reveal putative mechanisms of dysfunction
Young-In Chi, Timothy J. Stodola, Thiago M. De Assuncao, Elise N. Leverence, Swarnendu Tripathi, …, Brian F. Volkman, Brian C. Smith, Gwen Lomberk, Michael T. Zimmermann, Raul Urrutia
Orphanet Journal of Rare Diseases  ·  05 Feb 2021  ·  doi:10.1186/s13023-021-01692-w
Metabolomic profiling of pancreatic adenocarcinoma reveals fundamental clinical features
Abdessamad El Kaoutari, Nicolas A Fraunhoffer, Owen Hoare, Carlos Teyssedou, Philippe Soubeyran, …, Julie Roques, Gwen Lomberk, Raul Urrutia, Nelson Dusetti, Juan Iovanna
openRxiv  ·  02 Feb 2021  ·  doi:10.1101/2021.02.01.429087
Genome-wide CRISPR-Cas9 screen identified KLF11 as a druggable suppressor for sarcoma cancer stem cells
Yicun Wang, Jinhui Wu, Hui Chen, Yang Yang, Chengwu Xiao, …, Cheng Chen, Xuhui Zhou, Linhui Wang, Kunliang Guan, Le Qu
Science Advances  ·  29 Jan 2021  ·  doi:10.1126/sciadv.abe3445

2020

Variant anatomy of the biliary system as a cause of pancreatic and peri-ampullary cancers
Takashi Muraki, Michelle D. Reid, Burcin Pehlivanoglu, Raul S. Gonzalez, Aarti Sekhar, …, Raul A. Urrutia, Kathleen Christians, Susan Tsai, Douglas B. Evans, Volkan Adsay
HPB  ·  01 Dec 2020  ·  doi:10.1016/j.hpb.2020.03.014
ZZW-115–dependent inhibition of NUPR1 nuclear translocation sensitizes cancer cells to genotoxic agents
Wenjun Lan, Patricia Santofimia-Castaño, Mirna Swayden, Yi Xia, Zhengwei Zhou, …, Bruno Rizzuti, Vincent Geli, Philippe Soubeyran, José L. Neira, Juan Iovanna
JCI Insight  ·  17 Sep 2020  ·  doi:10.1172/JCI.INSIGHT.138117
A GATA6-centered gene regulatory network involving HNFs and ΔNp63 controls plasticity and immune escape in pancreatic cancer
Bernhard Kloesch, Natascha Hruschka, Vivien Ionasz, Rupert Oellinger, Sebastian Mueller, …, Dieter Saur, Roland Rad, Raul Urrutia, Francisco X. Real, Paola Martinelli
openRxiv  ·  09 Apr 2020  ·  doi:10.1101/2020.04.09.033456
Combined Targeting of G9a and Checkpoint Kinase 1 Synergistically Inhibits Pancreatic Cancer Cell Growth by Replication Fork Collapse
Guillermo Urrutia, Ann Salmonson, Jorge Toro-Zapata, Thiago M. de Assuncao, Angela Mathison, Nelson Dusetti, Juan Iovanna, Raul Urrutia, Gwen Lomberk
Molecular Cancer Research  ·  01 Mar 2020  ·  doi:10.1158/1541-7786.MCR-19-0490
Discovery, expression, cellular localization, and molecular properties of a novel, alternative spliced HP1γ isoform, lacking the chromoshadow domain
Angela Mathison, Thiago Milech De Assuncao, Nikita R. Dsouza, Monique Williams, Michael T. Zimmermann, Raul Urrutia, Gwen Lomberk
PLOS ONE  ·  06 Feb 2020  ·  doi:10.1371/journal.pone.0217452

2019

Targeting the Stress-Induced Protein NUPR1 to Treat Pancreatic Adenocarcinoma
Patricia Santofimia-Castaño, Yi Xia, Ling Peng, Adrián Velázquez-Campoy, Olga Abián, …, Raul Urrutia, Bruno Rizzuti, Philippe Soubeyran, José Luis Neira, Juan Iovanna
Cells  ·  17 Nov 2019  ·  doi:10.3390/cells8111453
Emerging epigenomic landscapes of pancreatic cancer in the era of precision medicine
Gwen Lomberk, Nelson Dusetti, Juan Iovanna, Raul Urrutia
Nature Communications  ·  28 Aug 2019  ·  doi:10.1038/s41467-019-11812-7
CBX5/G9a/H3K9me-mediated gene repression is essential to fibroblast activation during lung fibrosis
Giovanni Ligresti, Nunzia Caporarello, Jeffrey A. Meridew, Dakota L. Jones, Qi Tan, …, Anja C. Roden, Y.S. Prakash, Gwen Lomberk, Raul A. Urrutia, Daniel J. Tschumperlin
JCI Insight  ·  20 Jun 2019  ·  doi:10.1172/jci.insight.127111
Modeling post‐translational modifications and cancer‐associated mutations that impact the heterochromatin protein 1α‐importin α heterodimers
Michael T. Zimmermann, Monique M. Williams, Eric W. Klee, Gwen A. Lomberk, Raul Urrutia
Proteins: Structure, Function, and Bioinformatics  ·  14 Jun 2019  ·  doi:10.1002/prot.25752
Aurora kinase B-phosphorylated HP1α functions in chromosomal instability
Monique M. Williams, Angela J. Mathison, Trent Christensen, Patricia T. Greipp, Darlene L. Knutson, Eric W. Klee, Michael T. Zimmermann, Juan Iovanna, Gwen A. Lomberk, Raul A. Urrutia
Cell Cycle  ·  26 May 2019  ·  doi:10.1080/15384101.2019.1618126
Discovery, Expression, Cellular Localization, and Molecular Properties of a Novel, Alternative Spliced HP1γ Isoform, Lacking the Chromoshadow Domain
Angela Mathison, Thiago Milech De Assuncao, Nikita R. Dsouza, Monique Williams, Michael T. Zimmermann, Gwen Lomberk, Raul Urrutia
openRxiv  ·  14 May 2019  ·  doi:10.1101/638395
The New Bench for the Academic Surgeon: Precision Medicine
Gwen Lomberk, Raul Urrutia
Management of Localized Pancreatic Cancer  ·  01 Jan 2019  ·  doi:10.1007/978-3-319-98944-0_16
Enhancer of Zeste Homologue 2 Inhibition Attenuates TGF-β Dependent Hepatic Stellate Cell Activation and Liver Fibrosis
Rosa Martin-Mateos, Thiago M. De Assuncao, Juan Pablo Arab, Nidhi Jalan-Sakrikar, Usman Yaqoob, …, Gwen Lomberk, Philippe Mathurin, Raul Urrutia, Robert C. Huebert, Vijay H. Shah
Cellular and Molecular Gastroenterology and Hepatology  ·  01 Jan 2019  ·  doi:10.1016/j.jcmgh.2018.09.005
Disruption of FOXP3–EZH2 Interaction Represents a Pathobiological Mechanism in Intestinal Inflammation
Adebowale O. Bamidele, Phyllis A. Svingen, Mary R. Sagstetter, Olga F. Sarmento, Michelle Gonzalez, Manuel B. Braga Neto, Subra Kugathasan, Gwen Lomberk, Raul A. Urrutia, William A. Faubion
Cellular and Molecular Gastroenterology and Hepatology  ·  01 Jan 2019  ·  doi:10.1016/j.jcmgh.2018.08.009

2018

Inactivation of NUPR1 promotes cell death by coupling ER-stress responses with necrosis
Patricia Santofimia-Castaño, Wenjun Lan, Jennifer Bintz, Odile Gayet, Alice Carrier, …, José Luis Neira, Antonio González, Raul Urrutia, Philippe Soubeyran, Juan Iovanna
Scientific Reports  ·  19 Nov 2018  ·  doi:10.1038/s41598-018-35020-3
Mechanisms Underlying the Regulation of HP1γ by the NGF-PKA Signaling Pathway
Seungmae Seo, Angela Mathison, Adrienne Grzenda, Jewel Podratz, Ezequiel Calvo, Stephen Brimijoin, Anthony Windebank, Juan Iovanna, Gwen Lomberk, Raul Urrutia
Scientific Reports  ·  10 Oct 2018  ·  doi:10.1038/s41598-018-33475-y
Co-occurrence of a maternally inherited DNMT3A duplication and a paternally inherited pathogenic variant in EZH2 in a child with growth retardation and severe short stature: atypical Weaver syndrome or evidence of a DNMT3A dosage effect?
Katarzyna Polonis, Patrick R. Blackburn, Raul A. Urrutia, Gwen A. Lomberk, Teresa Kruisselbrink, …, Nicole J. Boczek, Nicole L. Hoppman, Dusica Babovic-Vuksanovic, Eric W. Klee, Pavel N. Pichurin
Molecular Case Studies  ·  25 May 2018  ·  doi:10.1101/mcs.a002899
Distinct epigenetic landscapes underlie the pathobiology of pancreatic cancer subtypes
Gwen Lomberk, Yuna Blum, Rémy Nicolle, Asha Nair, Krutika Satish Gaonkar, …, Veronique Secq, Aurélien De Reyniès, Nelson Dusetti, Juan Iovanna, Raul Urrutia
Nature Communications  ·  17 May 2018  ·  doi:10.1038/s41467-018-04383-6
Epigenetics of gastrointestinal diseases: notes from a workshop
David L. Marks, Rachel L. Olson, Raul Urrutia, Daniel D. Billadeau, Nilotpal Roy, …, Ryan A. Hlady, Keith Robertson, John Kisiel, Christopher L. Pin, Martin E. Fernandez-Zapico
Epigenetics  ·  03 Apr 2018  ·  doi:10.1080/15592294.2018.1464351
Inactivation of NUPR1 promotes cell death by coupling ER-stress responses with necrosis
Patricia Santofimia-Castaño, Wenjun Lan, Jennifer Bintz, Odile Gayet, Alice Carrier, …, José Luis Neira, Antonio González, Raul Urrutia, Philippe Soubeyran, Juan Iovanna
openRxiv  ·  06 Mar 2018  ·  doi:10.1101/277384
EGFR (ErbB) Signaling Pathways in Pancreatic Cancer Pathogenesis
Monique Williams, Gwen Lomberk, Raul Urrutia
Pancreatic Cancer  ·  01 Jan 2018  ·  doi:10.1007/978-1-4939-7193-0_15

2017

Synectin promotes fibrogenesis by regulating PDGFR isoforms through distinct mechanisms
Mary C. Drinane, Usman Yaqoob, Haibin Yu, Fanghong Luo, Thomas Greuter, …, Giovanni Ligresti, Daniel J. Tschumperlin, Alexander Revzin, Sheng Cao, Vijay H. Shah
JCI Insight  ·  21 Dec 2017  ·  doi:10.1172/jci.insight.92821
LSD1, a double-edged sword, confers dynamic chromatin regulation but commonly promotes aberrant cell growth
Meghan M Kozub, Ryan M Carr, Gwen L Lomberk, Martin E Fernandez-Zapico
F1000Research  ·  16 Nov 2017  ·  doi:10.12688/f1000research.12169.1
Pancreatic Adenocarcinoma Therapeutic Targets Revealed by Tumor-Stroma Cross-Talk Analyses in Patient-Derived Xenografts
Rémy Nicolle, Yuna Blum, Laetitia Marisa, Celine Loncle, Odile Gayet, …, Sophie Vasseur, Raul Urrutia, Aurélien de Reyniès, Nelson Dusetti, Juan Iovanna
Cell Reports  ·  01 Nov 2017  ·  doi:10.1016/j.celrep.2017.11.003
Combined AURKA and H3K9 Methyltransferase Targeting Inhibits Cell Growth By Inducing Mitotic Catastrophe
Angela Mathison, Ann Salmonson, Mckenna Missfeldt, Jennifer Bintz, Monique Williams, …, Trace Christensen, Navtej Buttar, Juan Iovanna, Robert Huebert, Gwen Lomberk
Molecular Cancer Research  ·  01 Aug 2017  ·  doi:10.1158/1541-7786.MCR-17-0063
Resolution of Cochlear Inflammation: Novel Target for Preventing or Ameliorating Drug-, Noise- and Age-related Hearing Loss
Gilda M. Kalinec, Gwen Lomberk, Raul A. Urrutia, Federico Kalinec
Frontiers in Cellular Neuroscience  ·  07 Jul 2017  ·  doi:10.3389/fncel.2017.00192
Functional validation reveals the novel missense V419L variant in TGFBR2 associated with Loeys–Dietz syndrome (LDS) impairs canonical TGF-β signaling
Margot A. Cousin, Michael T. Zimmermann, Angela J. Mathison, Patrick R. Blackburn, Nicole J. Boczek, Gavin R. Oliver, Gwen A. Lomberk, Raul A. Urrutia, David R. Deyle, Eric W. Klee
Molecular Case Studies  ·  14 Apr 2017  ·  doi:10.1101/mcs.a001727
Gene expression profiling of patient‐derived pancreatic cancer xenografts predicts sensitivity to the BET bromodomain inhibitor JQ 1: implications for individualized medicine efforts
Benjamin Bian, Martin Bigonnet, Odile Gayet, Celine Loncle, Aurélie Maignan, …, Gwen Lomberk, Raul Urrutia, Andres Saul, Nelson Dusetti, Juan Iovanna
EMBO Molecular Medicine  ·  08 Mar 2017  ·  doi:10.15252/emmm.201606975
A Novel Kleefstra Syndrome-associated Variant That Affects the Conserved TPLX Motif within the Ankyrin Repeat of EHMT1 Leads to Abnormal Protein Folding
Patrick R. Blackburn, Alexander Tischer, Michael T. Zimmermann, Jennifer L. Kemppainen, Sujatha Sastry, …, Ralitza H. Gavrilova, Gwen Lomberk, Matthew Auton, Raul Urrutia, Eric W. Klee
Journal of Biological Chemistry  ·  01 Mar 2017  ·  doi:10.1074/jbc.M116.770545
A novel de novo frameshift deletion in EHMT1 in a patient with Kleefstra Syndrome results in decreased H3K9 dimethylation
Patrick R. Blackburn, Monique Williams, Margot A. Cousin, Nicole J. Boczek, Geoffrey J. Beek, Gwen A. Lomberk, Raul A. Urrutia, Dusica Babovic‐Vuksanovic, Eric W. Klee
Molecular Genetics & Genomic Medicine  ·  26 Jan 2017  ·  doi:10.1002/mgg3.268

2016

Hedgehog Signaling Overcomes an EZH2-Dependent Epigenetic Barrier to Promote Cholangiocyte Expansion
Nidhi Jalan-Sakrikar, Thiago M. De Assuncao, Jie Lu, Luciana L. Almada, Gwen Lomberk, Martin E. Fernandez-Zapico, Raul Urrutia, Robert C. Huebert
PLOS ONE  ·  09 Dec 2016  ·  doi:10.1371/journal.pone.0168266
The pancreatitis-associated protein VMP1, a key regulator of inducible autophagy, promotes KrasG12D-mediated pancreatic cancer initiation
C Loncle, M I Molejon, S Lac, J I Tellechea, G Lomberk, L Gramatica, M F Fernandez Zapico, N Dusetti, R Urrutia, J L Iovanna
Cell Death & Disease  ·  14 Jul 2016  ·  doi:10.1038/cddis.2016.202
The Promise of Epigenomic Therapeutics in Pancreatic Cancer
Gwen A Lomberk, Juan Iovanna, Raul Urrutia
Epigenomics  ·  01 Jun 2016  ·  doi:10.2217/epi-2015-0016
REG3β Plays a Key Role in IL17RA Protumoral Effect—Response
Celine Loncle, Laia Bonjoch, Emma Folch-Puy, Maria Belen Lopez-Millan, Sophie Lac, …, Pierre Dubus, Gwen Lomberk, Raul Urrutia, Daniel Closa, Juan L. Iovanna
Cancer Research  ·  31 Mar 2016  ·  doi:10.1158/0008-5472.CAN-15-3355
Pharmacological and Therapeutic Targeting of Epigenetic Regulators
R. Urrutia, G.A. Lomberk
Chromatin Signaling and Diseases  ·  01 Jan 2016  ·  doi:10.1016/B978-0-12-802389-1.00021-6

2015

Evidence supporting a critical contribution of intrinsically disordered regions to the biochemical behavior of full-length human HP1γ
Gabriel Velez, Marisa Lin, Trace Christensen, William A. Faubion, Gwen Lomberk, Raul Urrutia
Journal of Molecular Modeling  ·  17 Dec 2015  ·  doi:10.1007/s00894-015-2874-z
Krüppel-like factor KLF10 deficiency predisposes to colitis through colonic macrophage dysregulation
Konstantinos A. Papadakis, James Krempski, Phyllis Svingen, Yuning Xiong, Olga F. Sarmento, Gwen A. Lomberk, Raul A. Urrutia, William A. Faubion
American Journal of Physiology-Gastrointestinal and Liver Physiology  ·  01 Dec 2015  ·  doi:10.1152/ajpgi.00309.2015
Pivotal Role of the Chromatin Protein Nupr1 in Kras-Induced Senescence and Transformation
Daniel Grasso, Jennifer Bintz, Gwen Lomberk, Maria Ines Molejon, Celine Loncle, Maria Noé Garcia, Maria Belen Lopez, Raul Urrutia, Juan L. Iovanna
Scientific Reports  ·  30 Nov 2015  ·  doi:10.1038/srep17549
IL17 Functions through the Novel REG3β–JAK2–STAT3 Inflammatory Pathway to Promote the Transition from Chronic Pancreatitis to Pancreatic Cancer
Celine Loncle, Laia Bonjoch, Emma Folch-Puy, Maria Belen Lopez-Millan, Sophie Lac, …, Pierre Dubus, Gwen Lomberk, Raul Urrutia, Daniel Closa, Juan L. Iovanna
Cancer Research  ·  15 Nov 2015  ·  doi:10.1158/0008-5472.CAN-15-0896
The Triple-Code Model for Pancreatic Cancer
Gwen A. Lomberk, Raul Urrutia
Surgical Clinics of North America  ·  01 Oct 2015  ·  doi:10.1016/j.suc.2015.05.011
Erratum: Development and characterization of human-induced pluripotent stem cell-derived cholangiocytes
Thiago M De Assuncao, Yan Sun, Nidhi Jalan-Sakrikar, Mary C Drinane, Bing Q Huang, …, Steven P O’Hara, Gwen A Lomberk, Raul A Urrutia, Yasuhiro Ikeda, Robert C Huebert
Laboratory Investigation  ·  01 Oct 2015  ·  doi:10.1038/labinvest.2015.99
Perhexiline activates KLF14 and reduces atherosclerosis by modulating ApoA-I production
Yanhong Guo, Yanbo Fan, Jifeng Zhang, Gwen A. Lomberk, Zhou Zhou, …, Subramaniam Pennathur, Cristen J. Willer, Daniel J. Rader, Raul Urrutia, Y. Eugene Chen
Journal of Clinical Investigation  ·  14 Sep 2015  ·  doi:10.1172/JCI79048
Functional Characterization of Nupr1L, A Novel p53‐Regulated Isoform of the High‐Mobility Group (HMG)‐Related Protumoral Protein Nupr1
Maria Belen Lopez, Maria Noé Garcia, Daniel Grasso, Jennifer Bintz, Maria Inés Molejon, Gabriel Velez, Gwen Lomberk, Jose Luis Neira, Raul Urrutia, Juan Iovanna
Journal of Cellular Physiology  ·  24 Aug 2015  ·  doi:10.1002/jcp.25022
Phenotypic Characterization of Mice Carrying Homozygous Deletion of KLF11, a Gene in Which Mutations Cause Human Neonatal and MODY VII Diabetes
Angela Mathison, Carlos Escande, Ezequiel Calvo, Seungmae Seo, Thomas White, …, Navtej Buttar, Juan Iovanna, Gwen Lomberk, Eduardo N. Chini, Raul Urrutia
Endocrinology  ·  06 Aug 2015  ·  doi:10.1210/en.2015-1145
Development and characterization of human-induced pluripotent stem cell-derived cholangiocytes
Thiago M De Assuncao, Yan Sun, Nidhi Jalan-Sakrikar, Mary C Drinane, Bing Q Huang, …, Steven P O’Hara, Gwen A Lomberk, Raul A Urrutia, Yasuhiro Ikeda, Robert C Huebert
Laboratory Investigation  ·  01 Jun 2015  ·  doi:10.1038/labinvest.2015.51
The Aurora A-HP1γ pathway regulates gene expression and mitosis in cells from the sperm lineage
Phoebe H. Leonard, Adrienne Grzenda, Angela Mathison, Dean E. Morbeck, Jolene R. Fredrickson, …, Ezequiel Calvo, Juan Iovanna, Charles C. Coddington, Raul Urrutia, Gwen Lomberk
BMC Developmental Biology  ·  29 May 2015  ·  doi:10.1186/s12861-015-0073-x
Krüppel-like factor KLF10 regulates transforming growth factor receptor II expression and TGF-β signaling in CD8+ T lymphocytes
Konstantinos A. Papadakis, James Krempski, Jesse Reiter, Phyllis Svingen, Yuning Xiong, …, April Huseby, Aaron J. Johnson, Gwen A. Lomberk, Raul A. Urrutia, William A. Faubion
American Journal of Physiology-Cell Physiology  ·  01 Mar 2015  ·  doi:10.1152/ajpcell.00262.2014

2014

Evidence Revealing Deregulation of The KLF11-Mao A Pathway in Association with Chronic Stress and Depressive Disorders
Sharonda Harris, Shakevia Johnson, Jeremy W Duncan, Chinelo Udemgba, Jeffrey H Meyer, …, Gwen Lomberk, Raul Urrutia, Xiao-Ming Ou, Craig A Stockmeier, Jun Ming Wang
Neuropsychopharmacology  ·  15 Dec 2014  ·  doi:10.1038/npp.2014.321
IER3 supports KRASG12D-dependent pancreatic cancer development by sustaining ERK1/2 phosphorylation
Maria Noé Garcia, Daniel Grasso, Maria Belen Lopez-Millan, Tewfik Hamidi, Celine Loncle, Richard Tomasini, Gwen Lomberk, Françoise Porteu, Raul Urrutia, Juan L. Iovanna
Journal of Clinical Investigation  ·  24 Sep 2014  ·  doi:10.1172/JCI76037
Differential coupling of KLF10 to Sin3-HDAC and PCAF regulates the inducibility of the FOXP3 gene
Yuning Xiong, Phyllis A. Svingen, Olga O. Sarmento, Thomas C. Smyrk, Maneesh Dave, Sahil Khanna, Gwen A. Lomberk, Raul A. Urrutia, William A. Faubion
American Journal of Physiology-Regulatory, Integrative and Comparative Physiology  ·  15 Sep 2014  ·  doi:10.1152/ajpregu.00085.2014
Evidence supporting the existence of a NUPR1-like family of helix-loop-helix chromatin proteins related to, yet distinct from, AT hook-containing HMG proteins
Raul Urrutia, Gabriel Velez, Marisa Lin, Gwen Lomberk, Jose Luis Neira, Juan Iovanna
Journal of Molecular Modeling  ·  24 Jul 2014  ·  doi:10.1007/s00894-014-2357-7
Genetic inactivation of the pancreatitis-inducible gene Nupr1 impairs PanIN formation by modulating KrasG12D-induced senescence
D Grasso, M N Garcia, T Hamidi, C Cano, E Calvo, G Lomberk, R Urrutia, J L Iovanna
Cell Death & Differentiation  ·  06 Jun 2014  ·  doi:10.1038/cdd.2014.74
Single and combinatorial chromatin coupling events underlies the function of transcript factor krüppel-like factor 11 in the regulation of gene networks
Ezequiel Calvo, Adrienne Grzenda, Gwen Lomberk, Angela Mathison, Juan Iovanna, Raul Urrutia
BMC Molecular Biology  ·  25 May 2014  ·  doi:10.1186/1471-2199-15-10
Aurora-A Mitotic Kinase Induces Endocrine Resistance through Down-Regulation of ERα Expression in Initially ERα+ Breast Cancer Cells
Mateusz Opyrchal, Jeffrey L. Salisbury, Shuya Zhang, James McCubrey, John Hawse, …, Amy Degnim, Carol Lange, James N. Ingle, Evanthia Galanis, Antonino B. D’Assoro
PLoS ONE  ·  09 May 2014  ·  doi:10.1371/journal.pone.0096995
New Role for Kruppel-like Factor 14 as a Transcriptional Activator Involved in the Generation of Signaling Lipids
Thiago M. de Assuncao, Gwen Lomberk, Sheng Cao, Usman Yaqoob, Angela Mathison, Douglas A. Simonetto, Robert C. Huebert, Raul A. Urrutia, Vijay H. Shah
Journal of Biological Chemistry  ·  01 May 2014  ·  doi:10.1074/jbc.M113.544346
Diabetes-Causing Gene, Kruppel-Like Factor 11, Modulates the Antinociceptive Response of Chronic Ethanol Intake
Xiao-Ming Ou, Chinelo Udemgba, Niping Wang, Xiaoli Dai, Gwen Lomberk, …, Junming Wang, Jeremy Duncan, Sharonda Harris, Carolyn A. Fairbanks, Xiao Zhang
Alcoholism: Clinical and Experimental Research  ·  15 Jan 2014  ·  doi:10.1111/acer.12258
Pancreatitis promotes oncogenic KrasG12D-induced pancreatic transformation through activation of Nupr1
Daniel Grasso, Maria Noé Garcia, Tewfik Hamidi, Carla Cano, Ezequiel Calvo, Gwen Lomberk, Raul Urrutia, Juan L Iovanna
Molecular & Cellular Oncology  ·  01 Jan 2014  ·  doi:10.4161/mco.29913

2013

Membrane-To-Nucleus Signaling Links Insulin-Like Growth Factor-1- and Stem Cell Factor-Activated Pathways
Yujiro Hayashi, David T. Asuzu, Simon J. Gibbons, Kirsten H. Aarsvold, Michael R. Bardsley, …, Brian P. Rubin, Jonathan A. Fletcher, Gianrico Farrugia, Raul A. Urrutia, Tamas Ordog
PLoS ONE  ·  07 Oct 2013  ·  doi:10.1371/journal.pone.0076822
Role for Krüppel-Like Transcription Factor 11 in Mesenchymal Cell Function and Fibrosis
Angela Mathison, Adrienne Grzenda, Gwen Lomberk, Gabriel Velez, Navtej Buttar, …, Martin Fernandez-Zapico, Nicholas F. LaRusso, William Faubion, Vijay H. Shah, Raul Urrutia
PLoS ONE  ·  17 Sep 2013  ·  doi:10.1371/journal.pone.0075311
Genetic inactivation ofNupr1acts as a dominant suppressor event in a two-hit model of pancreatic carcinogenesis
Carla E Cano, Tewfik Hamidi, Maria Noé Garcia, Daniel Grasso, Céline Loncle, …, Gwen Lomberk, Nelson Dusetti, Laurent Bartholin, Raul Urrutia, Juan L Iovanna
Gut  ·  11 Sep 2013  ·  doi:10.1136/gutjnl-2013-305221
Corrigendum to “Insights into the epigenetic mechanisms controlling pancreatic carcinogenesis” [Cancer Lett. 328 (2) (2012) 212–221]
Angela L. McCleary-Wheeler, Gwen A. Lomberk, Frank U. Weiss, Günter Schneider, Muller Fabbri, …, Sandra Baumgart, Juan L. Iovanna, Volker Ellenrieder, Raul Urrutia, Martin E. Fernandez-Zapico
Cancer Letters  ·  01 Aug 2013  ·  doi:10.1016/j.canlet.2013.05.024
Functional impact of Aurora A-mediated phosphorylation of HP1γ at serine 83 during cell cycle progression
Adrienne Grzenda, Phoebe Leonard, Seungmae Seo, Angela J Mathison, Guillermo Urrutia, Ezequiel Calvo, Juan Iovanna, Raul Urrutia, Gwen Lomberk
Epigenetics & Chromatin  ·  05 Jul 2013  ·  doi:10.1186/1756-8935-6-21
Krüppel-like Factor 11 Regulates the Expression of Metabolic Genes via an Evolutionarily Conserved Protein Interaction Domain Functionally Disrupted in Maturity Onset Diabetes of the Young
Gwen Lomberk, Adrienne Grzenda, Angela Mathison, Carlos Escande, Jin-San Zhang, …, Laurence J. Miller, Juan Iovanna, Eduardo N. Chini, Martin E. Fernandez-Zapico, Raul Urrutia
Journal of Biological Chemistry  ·  01 Jun 2013  ·  doi:10.1074/jbc.M112.434670
Epigenetics: A Promising Paradigm for Better Understanding and Managing Pain
Seungmae Seo, Adrienne Grzenda, Gwen Lomberk, Xiao-Ming Ou, Ricardo A. Cruciani, Raul Urrutia
The Journal of Pain  ·  01 Jun 2013  ·  doi:10.1016/j.jpain.2013.01.772
Novel role of VMP1 as modifier of the pancreatic tumor cell response to chemotherapeutic drugs
Marine Gilabert, Maria Inés Vaccaro, Martin E. Fernandez‐Zapico, Ezequiel L. Calvo, Olivier Turrini, …, Vincent Moutardier, Gwen Lomberk, Nelson Dusetti, Raul Urrutia, Juan L. Iovanna
Journal of Cellular Physiology  ·  25 May 2013  ·  doi:10.1002/jcp.24343
A Novel Role of the Sp/KLF Transcription Factor KLF11 in Arresting Progression of Endometriosis
Gaurang S. Daftary, Ye Zheng, Zaid M. Tabbaa, John K. Schoolmeester, Ravi P. Gada, Adrienne L. Grzenda, Angela J. Mathison, Gary L. Keeney, Gwen A. Lomberk, Raul Urrutia
PLoS ONE  ·  28 Mar 2013  ·  doi:10.1371/journal.pone.0060165
Functional characterization of EZH2β reveals the increased complexity of EZH2 isoforms involved in the regulation of mammalian gene expression
Adrienne Grzenda, Gwen Lomberk, Phyllis Svingen, Angela Mathison, Ezequiel Calvo, Juan Iovanna, Yuning Xiong, William Faubion, Raul Urrutia
Epigenetics & Chromatin  ·  28 Feb 2013  ·  doi:10.1186/1756-8935-6-3
NUPR1 works against the metabolic stress-induced autophagy-associated cell death in pancreatic cancer cells
Tewfik Hamidi, Carla E. Cano, Daniel Grasso, Maria Noé Garcia, Maria José Sandi, …, Sandro Goruppi, Raul Urrutia, Arkaitz Carracedo, Guillermo Velasco, Juan L. Iovanna
Autophagy  ·  09 Jan 2013  ·  doi:10.4161/auto.22258
Insights into the epigenetic mechanisms controlling pancreatic carcinogenesis
Angela L. McCleary-Wheeler, Gwen A. Lomberk, Frank U. Weiss, Günter Schneider, Muller Fabbri, …, Sandra Baumgart, Juan L. Iovanna, Volker Ellenrieder, Raul Urrutia, Martin E. Fernandez-Zapico
Cancer Letters  ·  01 Jan 2013  ·  doi:10.1016/j.canlet.2012.10.005

2012

Polycomb Antagonizes p300/CREB-binding Protein-associated Factor to Silence FOXP3 in a Kruppel-like Factor-dependent Manner
Yuning Xiong, Sahil Khanna, Adrienne L. Grzenda, Olga F. Sarmento, Phyllis A. Svingen, Gwen A. Lomberk, Raul A. Urrutia, William A. Faubion
Journal of Biological Chemistry  ·  01 Oct 2012  ·  doi:10.1074/jbc.M111.325332
Nupr1-Aurora Kinase A Pathway Provides Protection against Metabolic Stress-Mediated Autophagic-Associated Cell Death
Tewfik Hamidi, Carla E. Cano, Daniel Grasso, Maria Noé Garcia, Maria José Sandi, …, Raul Urrutia, Sandro Goruppi, Arkaitz Carracedo, Guillermo Velasco, Juan L. Iovanna
Clinical Cancer Research  ·  30 Sep 2012  ·  doi:10.1158/1078-0432.CCR-12-0026
Inhibition of Histone Deacetylation Potentiates the Evolution of Acquired Temozolomide Resistance Linked to MGMT Upregulation in Glioblastoma Xenografts
Gaspar J. Kitange, Ann C. Mladek, Brett L. Carlson, Mark A. Schroeder, Jenny L. Pokorny, …, Wenting Wu, Gwen A. Lomberk, Shiv K. Gupta, Raul A. Urrutia, Jann N. Sarkaria
Clinical Cancer Research  ·  30 Jul 2012  ·  doi:10.1158/1078-0432.CCR-12-0560
Homotypic cell cannibalism, a cell‐death process regulated by the nuclear protein 1, opposes to metastasis in pancreatic cancer
Carla E. Cano, María José Sandí, Tewfik Hamidi, Ezequiel L. Calvo, Olivier Turrini, …, Stéphane Garcia, Gwen Lomberk, Guido Kroemer, Raul Urrutia, Juan L. Iovanna
EMBO Molecular Medicine  ·  23 Jul 2012  ·  doi:10.1002/emmm.201201255
Mechanistic Role for a Novel Glucocorticoid-KLF11 (TIEG2) Protein Pathway in Stress-induced Monoamine Oxidase A Expression
Matthew Grunewald, Shakevia Johnson, Deyin Lu, Zhe Wang, Gwen Lomberk, …, Ian A. Paul, William L. Woolverton, Seungmae Seo, Donald B. Sittman, Xiao-Ming Ou
Journal of Biological Chemistry  ·  01 Jul 2012  ·  doi:10.1074/jbc.M112.373936
Nuclear protein 1 promotes pancreatic cancer development and protects cells from stress by inhibiting apoptosis
Tewfik Hamidi, Hana Algül, Carla Eliana Cano, Maria José Sandi, Maria Inés Molejon, …, Jean-Charles Dagorn, Falk Weih, Raul Urrutia, Roland Michael Schmid, Juan Lucio Iovanna
Journal of Clinical Investigation  ·  01 Jun 2012  ·  doi:10.1172/JCI60144
Sequence-specific Recruitment of Heterochromatin Protein 1 via Interaction with Krüppel-like Factor 11, a Human Transcription Factor Involved in Tumor Suppression and Metabolic Diseases
Gwen Lomberk, Angela J. Mathison, Adrienne Grzenda, Seungmae Seo, Cathrine J. DeMars, …, Ezequiel Calvo, Martin E. Fernandez-Zapico, Juan Iovanna, Navtej S. Buttar, Raul Urrutia
Journal of Biological Chemistry  ·  01 Apr 2012  ·  doi:10.1074/jbc.M112.342634
Krüppel-like Factor 11 Differentially Couples to Histone Acetyltransferase and Histone Methyltransferase Chromatin Remodeling Pathways to Transcriptionally Regulate Dopamine D2 Receptor in Neuronal Cells
Seungmae Seo, Gwen Lomberk, Angela Mathison, Navtej Buttar, Jewel Podratz, Ezequiel Calvo, Juan Iovanna, Stephen Brimijoin, Anthony Windebank, Raul Urrutia
Journal of Biological Chemistry  ·  01 Apr 2012  ·  doi:10.1074/jbc.M112.351395
Detailed Structural-Functional Analysis of the Krüppel-like Factor 16 (KLF16) Transcription Factor Reveals Novel Mechanisms for Silencing Sp/KLF Sites Involved in Metabolism and Endocrinology
Gaurang S. Daftary, Gwen A. Lomberk, Navtej S. Buttar, Thomas W. Allen, Adrienne Grzenda, …, Ezequiel Calvo, Juan L. Iovanna, Daniel D. Billadeau, Franklyn G. Prendergast, Raul Urrutia
Journal of Biological Chemistry  ·  01 Mar 2012  ·  doi:10.1074/jbc.M111.266007

2011

MAGE I Transcription Factors Regulate KAP1 and KRAB Domain Zinc Finger Transcription Factor Mediated Gene Repression
Tony Z. Xiao, Neehar Bhatia, Raul Urrutia, Gwen A. Lomberk, Andrew Simpson, B. Jack Longley
PLoS ONE  ·  18 Aug 2011  ·  doi:10.1371/journal.pone.0023747
Disruption of a Nuclear NFATc2 Protein Stabilization Loop Confers Breast and Pancreatic Cancer Growth Suppression by Zoledronic Acid
Shiv K. Singh, Sandra Baumgart, Garima Singh, Alexander O. König, Kristina Reutlinger, …, Thomas M. Gress, Gwen Lomberk, Raul Urrutia, Martin E. Fernandez-Zapico, Volker Ellenrieder
Journal of Biological Chemistry  ·  01 Aug 2011  ·  doi:10.1074/jbc.M110.197533
Disruption of a Novel Krüppel-like Transcription Factor p300-regulated Pathway for Insulin Biosynthesis Revealed by Studies of the c.-331 INS Mutation Found in Neonatal Diabetes Mellitus
Amélie Bonnefond, Gwen Lomberk, Navtej Buttar, Kanetee Busiah, Emmanuel Vaillant, …, Roland Stein, Michel Polak, Martine Vaxillaire, Philippe Froguel, Raul Urrutia
Journal of Biological Chemistry  ·  01 Aug 2011  ·  doi:10.1074/jbc.M110.215822
Complementary vascular and matrix regulatory pathways underlie the beneficial mechanism of action of sorafenib in liver fibrosis
Dominique Thabut, Chittaranjan Routray, Gwen Lomberk, Uday Shergill, Kevin Glaser, …, Andrew Vercnocke, Erik Ritman, Richard Ehman, Raul Urrutia, Vijay Shah
Hepatology  ·  01 Aug 2011  ·  doi:10.1002/hep.24427
A functional family-wide screening of SP/KLF proteins identifies a subset of suppressors of KRAS-mediated cell growth
Martin E. Fernandez-Zapico, Gwen A. Lomberk, Shoichiro Tsuji, Cathrine J. DeMars, Michael R. Bardsley, …, Jing-Jing Han, Debabrata Mukhopadhyay, Tamas Ordog, Navtej S. Buttar, Raul Urrutia
Biochemical Journal  ·  29 Mar 2011  ·  doi:10.1042/BJ20100773
A Team of Champions
Raul Urrutia
Pancreatology  ·  01 Mar 2011  ·  doi:10.1159/000323211
Epigenetic Silencing of Tumor Suppressor Genes in Pancreatic Cancer
Gwen A. Lomberk
Journal of Gastrointestinal Cancer  ·  12 Feb 2011  ·  doi:10.1007/s12029-011-9256-2

2010

Pancreatic Stellate Cell Models for Transcriptional Studies of Desmoplasia-Associated Genes
Angela Mathison, Ann Liebl, Jinai Bharucha, Debabrata Mukhopadhyay, Gwen Lomberk, Vijay Shah, Raul Urrutia
Pancreatology  ·  01 Oct 2010  ·  doi:10.1159/000320540
2010-2011 Meetings and Conferences
Gwen Lomberk
Pancreatology  ·  01 Oct 2010  ·  doi:10.1159/000315009
Kitlow Stem Cells Cause Resistance to Kit/Platelet-Derived Growth Factor α Inhibitors in Murine Gastrointestinal Stromal Tumors
Michael R. Bardsley, Viktor J. Horváth, David T. Asuzu, Andrea Lorincz, Doug Redelman, …, Gwen A. Lomberk, Raul A. Urrutia, Gianrico Farrugia, Brian P. Rubin, Tamas Ordog
Gastroenterology  ·  01 Sep 2010  ·  doi:10.1053/j.gastro.2010.05.083
Combinatorial Chemoprevention Reveals a Novel Smoothened-Independent Role of GLI1 in Esophageal Carcinogenesis
Sumera I. Ilyas, Cathrine J. DeMars, Andrea Comba, Vladimir G. Gainullin, Zaheer Rizvi, Luciana L. Almada, Kenneth Wang, Gwen Lomberk, Martin E. Fernández-Zapico, Navtej S. Buttar
Cancer Research  ·  31 Aug 2010  ·  doi:10.1158/0008-5472.CAN-10-0197
Angiogenesis
Gwen Lomberk
Pancreatology  ·  01 Jun 2010  ·  doi:10.1159/000297465
The Extracellular Matrix and Cell Migration
Gwen Lomberk
Pancreatology  ·  01 Apr 2010  ·  doi:10.1159/000280292
Distinct Role of Kruppel-like Factor 11 in the Regulation of Prostaglandin E2 Biosynthesis
Navtej S. Buttar, Cathrine J. DeMars, Gwen Lomberk, Sumera I. Ilyas, Juliana Bonilla-Velez, Shalini Achra, Shahrooz Rashtak, Kenneth K. Wang, Martin E. Fernandez-Zapico, Raul Urrutia
Journal of Biological Chemistry  ·  01 Apr 2010  ·  doi:10.1074/jbc.M109.077065
Conservation of the TGFβ/Labial Homeobox Signaling Loop in Endoderm-Derived Cells between Drosophila and Mammals
Gwen A. Lomberk, Issei Imoto, Brian Gebelein, Raul Urrutia, Tiffany A. Cook
Pancreatology  ·  01 Apr 2010  ·  doi:10.1159/000276895

2009

Microscopy
Gwen Lomberk
Pancreatology  ·  01 Nov 2009  ·  doi:10.1159/000219967
Sin3: Master scaffold and transcriptional corepressor
Adrienne Grzenda, Gwen Lomberk, Jin-San Zhang, Raul Urrutia
Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms  ·  01 Jun 2009  ·  doi:10.1016/j.bbagrm.2009.05.007
Funding Opportunities for Rare Pancreatic Diseases
Gwen Lomberk
Pancreatology  ·  01 Jun 2009  ·  doi:10.1159/000213442
Primers on Molecular Pathways —The Insulin Pathway
Gwen Lomberk, Raul Urrutia
Pancreatology  ·  01 May 2009  ·  doi:10.1159/000200021
Diabetes
Gwen Lomberk
Pancreatology  ·  01 May 2009  ·  doi:10.1159/000187722
Silencing of the Transforming Growth Factor-β (TGFβ) Receptor II by Krüppel-like Factor 14 Underscores the Importance of a Negative Feedback Mechanism in TGFβ Signaling
Mark J. Truty, Gwen Lomberk, Martin E. Fernandez-Zapico, Raul Urrutia
Journal of Biological Chemistry  ·  01 Mar 2009  ·  doi:10.1074/jbc.M807791200
Primers on Molecular Pathways — Caspase Pathway
Gwen Lomberk, Raul Urrutia
Pancreatology  ·  01 Jan 2009  ·  doi:10.1159/000178860
Lipid Biology
Gwen Lomberk
Pancreatology  ·  01 Jan 2009  ·  doi:10.1159/000235624
Krüppel-like Factor Proteins and Chromatin Dynamics
Navtej S. Buttar, Gwen A. Lomberk, Gaurang S. Daftary, Raul A. Urrutia
The Biology of Krüppel-like Factors  ·  01 Jan 2009  ·  doi:10.1007/978-4-431-87775-2_3
Educational Websites — Bioinformatics Tools II
Gwen Lomberk
Pancreatology  ·  01 Jan 2009  ·  doi:10.1159/000178767

2008

Primers on Molecular Pathways — Pain and Opioid Receptors, I
Gwen Lomberk, Ricardo Cruciani, Raul Urrutia
Pancreatology  ·  01 Oct 2008  ·  doi:10.1159/000159212
Patient Advocacy
Gwen Lomberk
Pancreatology  ·  01 Oct 2008  ·  doi:10.1159/000151478
Pain Management
Gwen Lomberk
Pancreatology  ·  01 Oct 2008  ·  doi:10.1159/000159211
The sunset of somatic genetics and the dawn of epigenetics: a new frontier in pancreatic cancer research
Gwen Lomberk, Angela J Mathison, Adrienne Grzenda, Raul Urrutia
Current Opinion in Gastroenterology  ·  01 Sep 2008  ·  doi:10.1097/MOG.0b013e32830b111d
Societies
Gwen Lomberk
Pancreatology  ·  01 Jun 2008  ·  doi:10.1159/000134270
Primers on Molecular Pathways — Notch
Gwen Lomberk, Raul Urrutia
Pancreatology  ·  01 May 2008  ·  doi:10.1159/000123603
Microarray Databases I
Gwen Lomberk
Pancreatology  ·  01 May 2008  ·  doi:10.1159/000123602
Pharmacogenomics
Gwen Lomberk
Pancreatology  ·  01 Apr 2008  ·  doi:10.1159/000114645

2007

Epigenetics
Gwen Lomberk
Pancreatology  ·  01 Oct 2007  ·  doi:10.1159/000108954
Stem Cells
Gwen Lomberk
Pancreatology  ·  01 Sep 2007  ·  doi:10.1159/000105496
Alcohol and Pancreas
Gwen Lomberk
Pancreatology  ·  01 Jul 2007  ·  doi:10.1159/000103921
Laboratory Skills
Gwen Lomberk
Pancreatology  ·  01 May 2007  ·  doi:10.1159/000099002

2006

Animal models
Gwen Lomberk
Pancreatology  ·  01 Oct 2006  ·  doi:10.1159/000094559
Educational Websites — Signaling Pathways
Gwen Lomberk
Pancreatology  ·  01 Aug 2006  ·  doi:10.1159/000092686
Educational Websites - Cell Biology II
Gwen Lomberk
Pancreatology  ·  01 Apr 2006  ·  doi:10.1159/000090021
Evidence for the existence of an HP1-mediated subcode within the histone code
Gwen Lomberk, Debora Bensi, Martín E. Fernandez-Zapico, Raul Urrutia
Nature Cell Biology  ·  12 Mar 2006  ·  doi:10.1038/ncb1383
[no title info]
Gwen Lomberk, Lori Wallrath, Raul Urrutia
Genome Biology  ·  01 Jan 2006  ·  doi:10.1186/gb-2006-7-7-228

2005

The family feud: turning off Sp1 by Sp1-like KLF proteins
Gwen Lomberk, Raul Urrutia
Biochemical Journal  ·  08 Nov 2005  ·  doi:10.1042/BJ20051234
When developmental signaling pathways go wrong and their impact on pancreatic cancer development
Gwen Lomberk, Martin E Fernandez-Zapico, Raul Urrutia
Current Opinion in Gastroenterology  ·  01 Sep 2005  ·  doi:10.1097/01.mog.0000175462.38153.f7
Funding opportunities
Gwen Lomberk
Pancreatology  ·  01 Jan 2005  ·  doi:10.1159/000084536
Bioinformatics tools
Gwen Lomberk
Pancreatology  ·  01 Jan 2005  ·  doi:10.1159/000086531

2003

Expression profiling in pancreatic cancer research: the initial steps and the road ahead
Martin E. Fernandez-Zapico, Gwen Callahan, Sharon Delgado, Raul Urrutia
Current Opinion in Gastroenterology  ·  01 Sep 2003  ·  doi:10.1097/00001574-200309000-00005
Characterization of FRA6E and its potential role in autosomal recessive juvenile parkinsonism and ovarian cancer
Stacy R. Denison, Gwen Callahan, Nicole A. Becker, Leslie A. Phillips, David I. Smith
Genes, Chromosomes and Cancer  ·  16 Jun 2003  ·  doi:10.1002/gcc.10236
Characterization of the common fragile site FRA9E and its potential role in ovarian cancer
Gwen Callahan, Stacy R Denison, Leslie A Phillips, Viji Shridhar, David I Smith
Oncogene  ·  29 Jan 2003  ·  doi:10.1038/sj.onc.1206171

1999

Frequent deletions within FRA7G at 7q31.2 in invasive epithelial ovarian cancer
Haojie Huang, Christopher P. Reed, Aderonke Mordi, Gwen Lomberk, Liang Wang, Viji Shridhar, Lynn Hartmann, Robert Jenkins, David I. Smith
Genes, Chromosomes and Cancer  ·  01 Jan 1999  ·  doi:10.1002/(SICI)1098-2264(199901)24:1<48::AID-GCC7>3.0.CO;2-V